How to clean carpet and hardwood floor after upstairs toilet clogged

I live in a 4plex apt. I am downstairs. The upstairs neighbors toilet was clogged and I had water on my bathroom floor, hallway, bedroom closet which is carpeted. It's all dry and tried cleaning floors and carpet . There is a urine smell in my bathroom and bedroom carpet smells like rotten garbage. How to clean and sanitize at home when I have no money to hire professional. I'm fighting with my landlord as he insists it's clean water and nothing else needs to be done. Also my bathroom ceiling paint is bubbling and feels like pockets of water. Just need to get smell out of carpet and floor for now. Thanks

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